{"id":13603,"date":"2023-01-01T00:00:00","date_gmt":"2023-01-01T08:00:00","guid":{"rendered":"https:\/\/www.hmc.edu\/clinic\/?p=13603"},"modified":"2023-05-15T09:29:23","modified_gmt":"2023-05-15T16:29:23","slug":"querying-latent-structure-in-single-cell-rna-seq-data","status":"publish","type":"post","link":"https:\/\/www.hmc.edu\/clinic\/2023\/querying-latent-structure-in-single-cell-rna-seq-data\/","title":{"rendered":"Querying Latent Structure in Single-cell RNA-seq Data"},"content":{"rendered":"<h2 class=\"project-sponsor-dept-year\"><span class=\"project-sponsor\">Memorial Sloan Kettering Cancer Center<\/span> <span class=\"project-dept-year\">Computer Science, 2022\u201323<\/span><\/h2>\n<div class=\"project-team\">\n<p><strong>Liaison(s):<\/strong> Dr. Roshan Sharma<br \/>\n<strong>Advisor(s):<\/strong> Dr. Naim Matasci, Jim Boerkoel<br \/>\n<strong>Students(s):<\/strong> Sonia Bliss, Austin Froelich, Kate Phillips (PM-F), Brian Simpkins (PM-S)<\/p>\n<\/div>\n<div class=\"project-abstract\">\n<p>Memorial Sloan Kettering Cancer Center (MSKCC) is a private cancer research and treatment facility located in New York City. Within MSKCC, the Dana Pe\u2019er lab has developed a novel single-cell analysis tool called SPECTRA for identifying meaningful biological factors in a single-cell RNA-seq data. This project, in collaboration with the SAIL (Single-Cell Analytics Innovation Lab) at MSKCC (directed by Dana Pe\u2019er), intends to create a graphical user interface (GUI) for SPECTRA, modify the source code to support GPU computation, and explore potential integration with other single-cell analytics tools.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Memorial Sloan Kettering Cancer Center Computer Science, 2022\u201323 Liaison(s): Dr. Roshan Sharma Advisor(s): Dr. Naim Matasci, Jim Boerkoel Students(s): Sonia [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[140],"tags":[695],"class_list":["post-13603","post","type-post","status-publish","format-standard","hentry","category-computer-science","tag-memorial-sloan-kettering-cancer-center"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13603","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/comments?post=13603"}],"version-history":[{"count":1,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13603\/revisions"}],"predecessor-version":[{"id":13628,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13603\/revisions\/13628"}],"wp:attachment":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/media?parent=13603"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/categories?post=13603"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/tags?post=13603"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}