{"id":13598,"date":"2023-01-01T00:00:00","date_gmt":"2023-01-01T08:00:00","guid":{"rendered":"https:\/\/www.hmc.edu\/clinic\/?p=13598"},"modified":"2023-05-15T09:29:24","modified_gmt":"2023-05-15T16:29:24","slug":"leveraging-relational-databases-for-spatial-transcriptomics","status":"publish","type":"post","link":"https:\/\/www.hmc.edu\/clinic\/2023\/leveraging-relational-databases-for-spatial-transcriptomics\/","title":{"rendered":"Leveraging Relational Databases for Spatial Transcriptomics"},"content":{"rendered":"<h2 class=\"project-sponsor-dept-year\"><span class=\"project-sponsor\">Harvard Center for Computational Biomedicine<\/span> <span class=\"project-dept-year\">Computer Science, 2022\u201323<\/span><\/h2>\n<div class=\"project-team\">\n<p><strong>Liaison(s):<\/strong> Ludwig Geistlinger, Robert Gentleman, Rafael Goncalves, Tyrone Lee, Nathan Palmer, Sunil Poudel, Sam Pullman<br \/>\n<strong>Advisor(s):<\/strong> Christopher A. Stone<br \/>\n<strong>Students(s):<\/strong> Chris Couto (PM-F), Alicia Lu, Elizabeth Lucas-Foley (PM-S), Mads Mansfield<\/p>\n<\/div>\n<div class=\"project-abstract\">\n<p>Harvard\u2019s Center for Computational Biomedicine supports experimental labs to analyze their data computationally. This project focuses on high-resolution microscopy data, particularly images of tissue. Spatial omics aim to identify single molecules within microscopic images. These large datasets are challenging to analyze using R or Python alone. Modern relational databases directly support spatial data types and are designed for working with large data. This project explores whether database queries are a more scalable alternative for processing and analysis of cellular maps.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Harvard Center for Computational Biomedicine Computer Science, 2022\u201323 Liaison(s): Ludwig Geistlinger, Robert Gentleman, Rafael Goncalves, Tyrone Lee, Nathan Palmer, Sunil [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[140],"tags":[668],"class_list":["post-13598","post","type-post","status-publish","format-standard","hentry","category-computer-science","tag-harvard-center-for-computational-biomedicine"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13598","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/comments?post=13598"}],"version-history":[{"count":1,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13598\/revisions"}],"predecessor-version":[{"id":13662,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13598\/revisions\/13662"}],"wp:attachment":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/media?parent=13598"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/categories?post=13598"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/tags?post=13598"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}