{"id":13585,"date":"2023-01-01T00:00:00","date_gmt":"2023-01-01T08:00:00","guid":{"rendered":"https:\/\/www.hmc.edu\/clinic\/?p=13585"},"modified":"2023-05-15T09:29:24","modified_gmt":"2023-05-15T16:29:24","slug":"visualizing-spatial-genomics-for-biology-and-translational-medicine","status":"publish","type":"post","link":"https:\/\/www.hmc.edu\/clinic\/2023\/visualizing-spatial-genomics-for-biology-and-translational-medicine\/","title":{"rendered":"Visualizing Spatial Genomics for Biology and Translational Medicine"},"content":{"rendered":"<h2 class=\"project-sponsor-dept-year\"><span class=\"project-sponsor\">Caltech Cai Lab<\/span> <span class=\"project-dept-year\">Computer Science, 2022\u201323<\/span><\/h2>\n<div class=\"project-team\">\n<p><strong>Liaison(s):<\/strong> Jonathan White, Henry Amrhein<br \/>\n<strong>Advisor(s):<\/strong> Katherine Breeden<br \/>\n<strong>Students(s):<\/strong> Toby Frank (PM-S), Cade Kritsch (PM-F), Trenton Wesley, Xoaquin Baca, Kamarion Porter<\/p>\n<\/div>\n<div class=\"project-abstract\">\n<p>Caltech\u2019s Cai Lab is pioneering the field of spatial genomics, which uses novel probe-based assays to obtain high-resolution, location-specific gene expression data within tissue samples. However, these data are multidimensional and difficult to visualize. We improved upon the 2021\u20132022 Clinic team\u2019s efforts to develop an efficient data storage, access and visualization pipeline for the lab\u2019s spatial genomic data. In particular, we have prioritized efficient data storage and access and worked with Cai Lab scientists to build interactive visualization tools to drive scientific discovery.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Caltech Cai Lab Computer Science, 2022\u201323 Liaison(s): Jonathan White, Henry Amrhein Advisor(s): Katherine Breeden Students(s): Toby Frank (PM-S), Cade Kritsch [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[140],"tags":[687],"class_list":["post-13585","post","type-post","status-publish","format-standard","hentry","category-computer-science","tag-caltech-cai-lab"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13585","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/comments?post=13585"}],"version-history":[{"count":1,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13585\/revisions"}],"predecessor-version":[{"id":13649,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/posts\/13585\/revisions\/13649"}],"wp:attachment":[{"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/media?parent=13585"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/categories?post=13585"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.hmc.edu\/clinic\/wp-json\/wp\/v2\/tags?post=13585"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}